Refactor test.py to import necessary modules, update code structure, and retrieve crossref data for dois_checked collection

test.pdf

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:622fad792b585088c13bfb2455ab30822083046fb8ae46c79866d568fd8cd8dd
+size 14416

test.py

@@ -1,19 +1,17 @@
+import crossref_commons.retrieval as crossref
 from _arango import ArangoDB
-
+from time import sleep
 arango = ArangoDB()
-initiatives = [i for i in arango.db.collection("eu_initiatives").all()]
-ordered_by_headline = sorted(initiatives, key=lambda x: x["headline"])
-import env_manager
-import os
-from ollama import Client
-import httpx
-
 
-ollama = Client(
-    os.getenv("https://lasseedfast.se/api/chat/"),
-    auth=httpx.BasicAuth(username="lasse", password="p239q8wimerxr2m389"),
-)
+checked = arango.db.collection('dois_checked').all()
 
-ollama.generate(
-    "What is the European Green Deal?"
-)  # This will generate a response from the LLM model
+for doi in checked:
+    print(doi)
+    try:
+        crossref_data = crossref.get_publication_as_json(doi['doi'])
+        arango.db.collection('dois_checked').update({'_key': doi['_key'], 'crossref_data': crossref_data})
+        sleep(1)
+    except Exception as e:
+        print(e)
+        sleep(1)
+        continue